Publications

Publications and conferences.

Preprints

  1. C. Castrogiovanni*, A. Inchingolo*, J.U. Harrison, D. Dudka, O. Sen, N.J. Burroughs, A.D. McAinsh, P. Meraldi (2021). "Microtubule-based mitotic spindles contain a micron-sized mixed-nucleotide zone" DOI:10.1101/2021.07.23.453504
    2. *: denotes equal contribution

Published

  1. O. Sen*, J.U. Harrison*, N.J. Burroughs and A.D. McAinsh (2021). "Kinetochore life histories reveal an Aurora-B-dependent error correction mechanism in anaphase." Dev. Cell DOI:10.1016/j.devcel.2021.10.007
  2. T.E. Germanova, E. Roscioli, J.U. Harrison, A.D. McAinsh, and N.J. Burroughs (2021). "Subcellular Euclidean distance measurements with multicolor fluorescence localization imaging in cultured cells." STAR Protocols DOI:10.1016/j.xpro.2021.100774
  3. J.U. Harrison and R.E. Baker (2020). "An automatic adaptive method to combine summary statistics in approximate Bayesian computation" PLOS One DOI:10.1371/journal.pone.0236954
  4. J.U. Harrison, R.M. Parton, I. Davis, and R.E. Baker (2019). "Testing models of mRNA localization reveals robustness regulated by reducing transport between cells" Biophys. J. DOI:10.1016/j.bpj.2019.10.025
  5. J.U. Harrison and R.E. Baker (2018). "The impact of temporal sampling resolution on parameter inference for biological transport models" PLOS Comp. Biol. DOI:10.1371/journal.pcbi.1006235
  6. J.U. Harrison and C.A. Yates (2016). "A hybrid algorithm for coupling PDE and compartment-based dynamics" J. R. Soc. Int. DOI:10.1098/rsif.2016.0335
    7. *: denotes equal contribution

External Talks

  1. April 2021 Invited symposium talk at BMC/BAMC (online). "Kinetochore life histories reveal the origins of chromosome mis-segregation and correction mechanisms."
  2. August 2020 Contributed talk at eSMB2020 (online). "Hierarchical Bayesian modelling of chromosome segregation allows characterisation of a distinct dynamic signature of errors in cell division."
  3. March 2020 Poster presentation at STEM4BRITAIN in Westminster, London. "Cell division without errors -:- how can maths help biology?"
  4. September 2019 Poster presentation at PKM60: on growth and pattern formation. "Gaining quantitative insight into the mechano-chemical regulation of cell division via mathematical modelling."
  5. March 2019 Poster presentation at Mitosis in Split, Croatia. "Tracking kinetochores in lattice light sheet data."
  6. January 2019 Talk at R User Group, Oxford. "Is my code really doing what I think it is? A brief introduction to unit testing in R with testthat." Slides
  7. November 2018 Talk at workshop on Statistical challenges of model development in biology at BIRS, Banff, Canada. "Experimental verification of a coarse-grained model of mRNA localization reveals robustness regulated via crowding." Video
  8. July 2018 Contributed talk at European Conference of Mathematical and Theoretical Biology (ECMTB), Lisbon. "Experimental verification of a coarse-grained model predicts production rate limits mRNA localization."
  9. July 2017 Contributed talk at SMB 2017 in Salt Lake City, Utah, USA. “The impact of temporal sampling resolution on parameter inference for biological transport models.”
  10. July 2017 Poster presentation at INI workshop in Cambridge, UK on scalable inference. “An automatic adaptive algorithm method to combine summary statistics in approximate Bayesian computation.”
  11. March 2017 Invited speaker at Hybrid multi-scale modelling and validation workshop at MBI, Ohio State University, Ohio, USA. “The impact of collecting data at varying temporal resolution on biological transport models.”
  12. March 2017 Quantitative biology seminar at University of Michigan, Ann Arbor, Michigan, USA. “The impact of collecting data at varying temporal resolution on biological transport models.”
  13. July 2016 Talk at Department of Anatomy, Physiology and Genetics, Univeristy of Oxford. "Modelling and inference for mRNA localization in Drosophila."
  14. July 2016 Contributed talk at European Conference of Mathematical and Theoretical Biology (ECMTB), Nottingham. "Modelling and inference for mRNA localization in Drosophila."